Is this irritating for the workers?

I love Chipotle and eat there about 2-3 times per week. However, I have Celiac disease. This is one of the few restaurants that doesn't make me ill. However, I recently added cheese to my bowl and have realized that I am getting cross contaminated because the cheese is scooped by hands that have rolled burritos. I wound up with some pretty uncomfortable GI issues today after eating lunch there. Everything else I order is scooped with a spoon. I hate to give up my cheese. Would the workers be totally annoyed if I asked them to change gloves for the cheese or to possibly scoop it with a plastic side cup? I don't want to be seen as "THAT" customer who the workers roll their eyes at whenever they enter the store.